Detailed information of SNP:
|
SNP ID:
sf1008441242(Gbrowse)
Chromosome: chr10 Position: 8441242 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.88% | 17.12% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008441242 | G->A | INTERGENIC | None |