Detailed information of SNP:
|
SNP ID:
sf1008470562(Gbrowse)
Chromosome: chr10 Position: 8470562 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 73.07% | 26.93% |
| All Indica | 780 | 53.33% | 46.67% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 25.35% | 74.65% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 209 | 71.77% | 28.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008470562 | C->G | LOC_Os10g17050(LOC_Os10g17050.1) | Non-Synonymous SNP |