Detailed information of SNP:
|
SNP ID:
sf1008518123(Gbrowse)
Chromosome: chr10 Position: 8518123 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 63.73% | 36.27% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 488 | 17.42% | 82.58% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 326 | 4.29% | 95.71% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008518123 | C->A | INTERGENIC | None |