Detailed information of SNP:
|
SNP ID:
sf1008568188(Gbrowse)
Chromosome: chr10 Position: 8568188 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 80.76% | 19.24% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 497 | 62.78% | 37.22% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 49.25% | 50.75% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008568188 | T->C | INTERGENIC | None |