Detailed information of SNP:
|
SNP ID:
sf1008575589(Gbrowse)
Chromosome: chr10 Position: 8575589 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 98.16% | 1.84% |
| All Indica | 773 | 97.54% | 2.46% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 38 | 92.11% | 7.89% |
| Indica I | 367 | 97.82% | 2.18% |
| Indica II | 202 | 99.01% | 0.99% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008575589 | T->A | INTERGENIC | None |