Detailed information of SNP:
|
SNP ID:
sf1008610190(Gbrowse)
Chromosome: chr10 Position: 8610190 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 52.32% | 47.68% |
| All Indica | 798 | 32.58% | 67.42% |
| All Japonica | 418 | 81.58% | 18.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 258 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008610190 | C->T | INTERGENIC | None |