Detailed information of SNP:
|
SNP ID:
sf1008614965(Gbrowse)
Chromosome: chr10 Position: 8614965 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 97.30% | 2.70% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 202 | 95.54% | 4.46% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008614965 | C->T | INTERGENIC | None |