Detailed information of SNP:
|
SNP ID:
sf1008667599(Gbrowse)
Chromosome: chr10 Position: 8667599 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1180 | 53.14% | 46.86% |
| All Indica | 599 | 27.05% | 72.95% |
| All Japonica | 474 | 93.67% | 6.33% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 303 | 12.54% | 87.46% |
| Indica II | 148 | 41.89% | 58.11% |
| Indica Intermediate | 148 | 41.89% | 58.11% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 75 | 69.33% | 30.67% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 6 | 50.00% | 50.00% |
| Intermediate | 34 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008667599 | C->T | LOC_Os10g17350(LOC_Os10g17350.1) | Synonymous |