Detailed information of SNP:
|
SNP ID:
sf1008668060(Gbrowse)
Chromosome: chr10 Position: 8668060 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 71.06% | 28.94% |
| All Indica | 786 | 92.88% | 7.12% |
| All Japonica | 458 | 29.48% | 70.52% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 309 | 12.94% | 87.06% |
| Tropical Japonica | 83 | 87.95% | 12.05% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008668060 | A->G | LOC_Os10g17350(LOC_Os10g17350.1) | Synonymous |