Detailed information of SNP:
|
SNP ID:
sf1008669345(Gbrowse)
Chromosome: chr10 Position: 8669345 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 65.41% | 34.59% |
| All Indica | 772 | 92.10% | 7.90% |
| All Japonica | 461 | 17.35% | 82.65% |
| Aus | 45 | 91.11% | 8.89% |
| Indica I | 361 | 90.86% | 9.14% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 315 | 6.98% | 93.02% |
| Tropical Japonica | 80 | 57.50% | 42.50% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008669345 | A->T | LOC_Os10g17350(LOC_Os10g17350.1) | Non-Synonymous SNP |