Detailed information of SNP:
|
SNP ID:
sf1008698850(Gbrowse)
Chromosome: chr10 Position: 8698850 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 63.96% | 36.04% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008698850 | C->T | LOC_Os10g17400(LOC_Os10g17400.1) | Synonymous |