Detailed information of SNP:
|
SNP ID:
sf1008701400(Gbrowse)
Chromosome: chr10 Position: 8701400 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.46% | 44.54% |
| All Indica | 799 | 84.61% | 15.39% |
| All Japonica | 497 | 15.69% | 84.31% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008701400 | G->A | LOC_Os10g17400(LOC_Os10g17400.1) | Non-Synonymous SNP |