Detailed information of SNP:
|
SNP ID:
sf1008705495(Gbrowse)
Chromosome: chr10 Position: 8705495 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1154 | 60.31% | 39.69% |
| All Indica | 581 | 24.27% | 75.73% |
| All Japonica | 468 | 98.08% | 1.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 9.04% | 90.96% |
| Indica II | 112 | 56.25% | 43.75% |
| Indica Intermediate | 126 | 37.30% | 62.70% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 67 | 95.52% | 4.48% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 32 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008705495 | A->G | LOC_Os10g17410(LOC_Os10g17410.1) | Synonymous |