Detailed information of SNP:
|
SNP ID:
sf1008723476(Gbrowse)
Chromosome: chr10 Position: 8723476 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.53% | 33.47% |
| All Indica | 799 | 42.43% | 57.57% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008723476 | G->A | LOC_Os10g17454(LOC_Os10g17454.3) | INTRON |
| sf1008723476 | G->A | LOC_Os10g17454(LOC_Os10g17454.2) | INTRON |
| sf1008723476 | G->A | LOC_Os10g17454(LOC_Os10g17454.1) | INTRON |