Detailed information of SNP:
|
SNP ID:
sf1008740303(Gbrowse)
Chromosome: chr10 Position: 8740303 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 72.80% | 27.20% |
| All Indica | 799 | 68.84% | 31.16% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008740303 | C->T | INTERGENIC | None |