Detailed information of SNP:
|
SNP ID:
sf1008748337(Gbrowse)
Chromosome: chr10 Position: 8748337 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 79.07% | 20.93% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 61.37% | 38.63% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008748337 | C->A | LOC_Os10g17489(LOC_Os10g17489.1) | INTRON |