Detailed information of SNP:
|
SNP ID:
sf1008768009(Gbrowse)
Chromosome: chr10 Position: 8768009 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.96% | 10.04% |
| All Indica | 795 | 88.18% | 11.82% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008768009 | C->T | INTERGENIC | None |