Detailed information of SNP:
|
SNP ID:
sf1008768539(Gbrowse)
Chromosome: chr10 Position: 8768539 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 89.69% | 10.31% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008768539 | A->G | INTERGENIC | None |