Detailed information of SNP:
|
SNP ID:
sf1008794402(Gbrowse)
Chromosome: chr10 Position: 8794402 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 97.04% | 2.96% |
| All Indica | 777 | 94.85% | 5.15% |
| All Japonica | 488 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 206 | 94.17% | 5.83% |
| Indica Intermediate | 198 | 91.41% | 8.59% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008794402 | C->T | LOC_Os10g17570(LOC_Os10g17570.1) | Non-Synonymous SNP |