Detailed information of SNP:
|
SNP ID:
sf1008825630(Gbrowse)
Chromosome: chr10 Position: 8825630 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 69.19% | 30.81% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 491 | 17.11% | 82.89% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 3.01% | 96.99% |
| Tropical Japonica | 91 | 60.44% | 39.56% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008825630 | G->A | LOC_Os10g17610(LOC_Os10g17610.1) | Synonymous |