Detailed information of SNP:
|
SNP ID:
sf1008876702(Gbrowse)
Chromosome: chr10 Position: 8876702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.61% | 34.39% |
| All Indica | 799 | 56.70% | 43.30% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008876702 | C->T | INTERGENIC | None |