Detailed information of SNP:
|
SNP ID:
sf1008880445(Gbrowse)
Chromosome: chr10 Position: 8880445 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 61.05% | 38.95% |
| All Indica | 723 | 90.46% | 9.54% |
| All Japonica | 489 | 14.11% | 85.89% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 313 | 88.50% | 11.50% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 88 | 50.00% | 50.00% |
| Japonica Intermediate | 66 | 24.24% | 75.76% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008880445 | C->T | LOC_Os10g17710(LOC_Os10g17710.1) | Synonymous |