Detailed information of SNP:
|
SNP ID:
sf1008886693(Gbrowse)
Chromosome: chr10 Position: 8886693 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 90.01% | 9.99% |
| All Indica | 766 | 87.99% | 12.01% |
| All Japonica | 495 | 95.35% | 4.65% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 362 | 87.57% | 12.43% |
| Indica II | 200 | 89.50% | 10.50% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008886693 | C->T | LOC_Os10g17724(LOC_Os10g17724.1) | Synonymous |