Detailed information of SNP:
|
SNP ID:
sf1008886996(Gbrowse)
Chromosome: chr10 Position: 8886996 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 82.16% | 17.84% |
| All Indica | 749 | 71.43% | 28.57% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 347 | 85.01% | 14.99% |
| Indica II | 198 | 57.58% | 42.42% |
| Indica Intermediate | 204 | 61.76% | 38.24% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008886996 | A->G | LOC_Os10g17724(LOC_Os10g17724.1) | INTRON |