Detailed information of SNP:
|
SNP ID:
sf1008897350(Gbrowse)
Chromosome: chr10 Position: 8897350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.56% | 34.44% |
| All Indica | 797 | 56.34% | 43.66% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 212 | 22.17% | 77.83% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008897350 | C->T | INTERGENIC | None |