Detailed information of SNP:
SNP ID:
sf1008902568(Gbrowse)
Chromosome: chr10 Position: 8902568 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 65.47% | 34.53% |
All Indica | 799 | 45.56% | 54.44% |
All Japonica | 497 | 92.76% | 7.24% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 14.13% | 85.87% |
Indica II | 213 | 80.28% | 19.72% |
Indica Intermediate | 211 | 66.35% | 33.65% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 68.09% | 31.91% |
Japonica Intermediate | 68 | 94.12% | 5.88% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1008902568 | G->A | INTERGENIC | None |