Detailed information of SNP:
|
SNP ID:
sf1008907061(Gbrowse)
Chromosome: chr10 Position: 8907061 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 94.18% | 5.82% |
| All Indica | 783 | 90.55% | 9.45% |
| All Japonica | 486 | 98.77% | 1.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 207 | 79.23% | 20.77% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008907061 | C->T | INTERGENIC | None |