Detailed information of SNP:
|
SNP ID:
sf1008920844(Gbrowse)
Chromosome: chr10 Position: 8920844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 66.90% | 33.10% |
| All Indica | 798 | 58.15% | 41.85% |
| All Japonica | 493 | 91.28% | 8.72% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008920844 | G->A | INTERGENIC | None |