Detailed information of SNP:
|
SNP ID:
sf1008920869(Gbrowse)
Chromosome: chr10 Position: 8920869 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1306 | 55.28% | 44.72% |
| All Indica | 794 | 83.88% | 16.12% |
| All Japonica | 392 | 8.67% | 91.33% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 234 | 10.26% | 89.74% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 64 | 6.25% | 93.75% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008920869 | C->T | INTERGENIC | None |