Detailed information of SNP:
|
SNP ID:
sf1008937543(Gbrowse)
Chromosome: chr10 Position: 8937543 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 69.25% | 30.75% |
| All Indica | 794 | 51.01% | 48.99% |
| All Japonica | 492 | 94.51% | 5.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 22.70% | 77.30% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008937543 | G->T | LOC_Os10g17810(LOC_Os10g17810.1) | INTRON |