Detailed information of SNP:
|
SNP ID:
sf1008975606(Gbrowse)
Chromosome: chr10 Position: 8975606 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 97.54% | 2.46% |
| All Indica | 792 | 98.23% | 1.77% |
| All Japonica | 484 | 98.14% | 1.86% |
| Aus | 52 | 84.62% | 15.38% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 82 | 92.68% | 7.32% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008975606 | C->T | LOC_Os10g17900(LOC_Os10g17900.1) | Synonymous |