Detailed information of SNP:
|
SNP ID:
sf1008978687(Gbrowse)
Chromosome: chr10 Position: 8978687 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1217 | 89.98% | 10.02% |
| All Indica | 646 | 85.45% | 14.55% |
| All Japonica | 460 | 96.74% | 3.26% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 295 | 85.42% | 14.58% |
| Indica II | 175 | 83.43% | 16.57% |
| Indica Intermediate | 176 | 87.50% | 12.50% |
| Temperate Japonica | 326 | 98.16% | 1.84% |
| Tropical Japonica | 78 | 89.74% | 10.26% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 85.29% | 14.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008978687 | T->C | LOC_Os10g17900(LOC_Os10g17900.1) | Synonymous |