Detailed information of SNP:
|
SNP ID:
sf1009030023(Gbrowse)
Chromosome: chr10 Position: 9030023 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.92% | 38.08% |
| All Indica | 799 | 43.55% | 56.45% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009030023 | A->G | INTERGENIC | None |