Detailed information of SNP:
|
SNP ID:
sf1009035295(Gbrowse)
Chromosome: chr10 Position: 9035295 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 71.18% | 28.82% |
| All Indica | 783 | 60.15% | 39.85% |
| All Japonica | 496 | 85.89% | 14.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 207 | 25.60% | 74.40% |
| Indica Intermediate | 203 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009035295 | C->T | LOC_Os10g17970(LOC_Os10g17970.1) | INTRON |