Detailed information of SNP:
|
SNP ID:
sf1009038930(Gbrowse)
Chromosome: chr10 Position: 9038930 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 69.59% | 30.41% |
| All Indica | 797 | 57.84% | 42.16% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 211 | 22.27% | 77.73% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009038930 | A->G | INTERGENIC | None |