Detailed information of SNP:
|
SNP ID:
sf1009041945(Gbrowse)
Chromosome: chr10 Position: 9041945 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 71.86% | 28.14% |
| All Indica | 791 | 51.20% | 48.80% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 22.49% | 77.51% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 209 | 69.38% | 30.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009041945 | G->A | LOC_Os10g17980(LOC_Os10g17980.1) | Synonymous |