Detailed information of SNP:
|
SNP ID:
sf1009043503(Gbrowse)
Chromosome: chr10 Position: 9043503 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 67.30% | 32.70% |
| All Indica | 759 | 52.70% | 47.30% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 344 | 25.00% | 75.00% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 204 | 69.61% | 30.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009043503 | G->A | LOC_Os10g17980(LOC_Os10g17980.1) | Non-Synonymous SNP |