Detailed information of SNP:
|
SNP ID:
sf1009043860(Gbrowse)
Chromosome: chr10 Position: 9043860 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 70.28% | 29.72% |
| All Indica | 761 | 56.77% | 43.23% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 337 | 30.56% | 69.44% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009043860 | G->A | LOC_Os10g17980(LOC_Os10g17980.1) | Non-Synonymous SNP |