Detailed information of SNP:
|
SNP ID:
sf1009056213(Gbrowse)
Chromosome: chr10 Position: 9056213 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 68.83% | 31.17% |
| All Indica | 798 | 57.39% | 42.61% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 22.17% | 77.83% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009056213 | G->A | INTERGENIC | None |