Detailed information of SNP:
|
SNP ID:
sf1009058359(Gbrowse)
Chromosome: chr10 Position: 9058359 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 87.92% | 12.08% |
| All Indica | 796 | 84.92% | 15.08% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 211 | 73.46% | 26.54% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009058359 | C->T | INTERGENIC | None |