Detailed information of SNP:
|
SNP ID:
sf1009059216(Gbrowse)
Chromosome: chr10 Position: 9059216 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.79% | 38.21% |
| All Indica | 796 | 55.40% | 44.60% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 208 | 34.62% | 65.38% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009059216 | G->A | INTERGENIC | None |