Detailed information of SNP:
|
SNP ID:
sf1009061971(Gbrowse)
Chromosome: chr10 Position: 9061971 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.23% | 28.77% |
| All Indica | 798 | 61.15% | 38.85% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009061971 | C->T | INTERGENIC | None |