Detailed information of SNP:
|
SNP ID:
sf1009065313(Gbrowse)
Chromosome: chr10 Position: 9065313 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 63.71% | 36.29% |
| All Indica | 797 | 57.47% | 42.53% |
| All Japonica | 492 | 69.92% | 30.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 330 | 76.36% | 23.64% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009065313 | G->A | INTERGENIC | None |