Detailed information of SNP:
|
SNP ID:
sf1009070869(Gbrowse)
Chromosome: chr10 Position: 9070869 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 798 | 44.11% | 55.89% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 11.47% | 88.53% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009070869 | A->G | LOC_Os10g18026(LOC_Os10g18026.1) | INTRON |