Detailed information of SNP:
|
SNP ID:
sf1009073253(Gbrowse)
Chromosome: chr10 Position: 9073253 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 74.87% | 25.13% |
| All Indica | 750 | 68.40% | 31.60% |
| All Japonica | 469 | 82.94% | 17.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 92.66% | 7.34% |
| Indica II | 195 | 37.95% | 62.05% |
| Indica Intermediate | 187 | 52.41% | 47.59% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 76 | 27.63% | 72.37% |
| Japonica Intermediate | 62 | 70.97% | 29.03% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009073253 | G->A | LOC_Os10g18042(LOC_Os10g18042.1) | Non-Synonymous SNP |