Detailed information of SNP:
|
SNP ID:
sf1009076627(Gbrowse)
Chromosome: chr10 Position: 9076627 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.54% | 29.46% |
| All Indica | 795 | 59.62% | 40.38% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009076627 | G->A | INTERGENIC | None |