Detailed information of SNP:
|
SNP ID:
sf1009077235(Gbrowse)
Chromosome: chr10 Position: 9077235 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.54% | 44.46% |
| All Indica | 799 | 42.68% | 57.32% |
| All Japonica | 496 | 83.87% | 16.13% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009077235 | T->C | INTERGENIC | None |