Detailed information of SNP:
SNP ID:
sf1009094478(Gbrowse)
Chromosome: chr10 Position: 9094478 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1416 | 77.12% | 22.88% |
All Indica | 797 | 99.50% | 0.50% |
All Japonica | 497 | 36.62% | 63.38% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 211 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 20.00% | 80.00% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 41.18% | 58.82% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1009094478 | T->G | INTERGENIC | None |