Detailed information of SNP:
|
SNP ID:
sf1009096608(Gbrowse)
Chromosome: chr10 Position: 9096608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.64% | 27.36% |
| All Indica | 799 | 58.82% | 41.18% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009096608 | G->A | LOC_Os10g18080(LOC_Os10g18080.1) | Synonymous |