Detailed information of SNP:
|
SNP ID:
sf1009101767(Gbrowse)
Chromosome: chr10 Position: 9101767 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.69% | 41.31% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 494 | 11.94% | 88.06% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 91 | 47.25% | 52.75% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009101767 | C->T | INTERGENIC | None |